I think that is what may happen. Everyone is going to get screwed by the Infinite Tsukoyomi except Kakashi who will be saved as he is in the other dimension. He'll pop out at the right time to destroy Obito/Madara's (when he becomes the mortal Jinchuuriki of the Jyuubi) control of the situation and that will trigger the release of Naruto and possibly Sasuke to save the day.