Dunno about the order of the 2nd season, but I personally loved the way they did the first season. The episode order was not simply random for the sake of being random. It was done intentionally to make the plot flow better, with the climax at the end. There is also the side effect of added mystery, but that was hardly the point.
If they can execute the 2nd season just as brilliantly, I couldn't care less if they jumbled the episodes or not.